Complete genome sequence data of Flavobacterium anhuiense strain GSE09, a volatile-producing biocontrol bacterium isolated from cucumber (Cucumis sativus) root.
Identifieur interne : 000553 ( Main/Exploration ); précédent : 000552; suivant : 000554Complete genome sequence data of Flavobacterium anhuiense strain GSE09, a volatile-producing biocontrol bacterium isolated from cucumber (Cucumis sativus) root.
Auteurs : Jin-Ju Jeong [Corée du Sud] ; Siti Sajidah [Corée du Sud] ; Ji Yeon Oh [Corée du Sud] ; Mee Kyung Sang [Corée du Sud] ; Kyoung-Su Kim [Corée du Sud] ; Ki Deok Kim [Corée du Sud]Source :
- Data in brief [ 2352-3409 ] ; 2019.
Abstract
Flavobacterium anhuiense (previously identified as Flavobacterium johnsoniae) strain GSE09 is a volatile-producing bacterium that exhibits significant biocontrol activity against an oomycete pathogen, Phytophthora capsici, on pepper plants. Here, we report the complete genome sequence data of strain GSE09, isolated from surface-sterilized cucumber root. The genome consists of a circular 5,109,718-bp chromosome with a G + C content of 34.30%. A total of 4,138 complete coding sequences including 15 rRNA, 66 tRNA, 3 ncRNA, and 51 pseudogene sequences were retrieved. Thus, the genome sequence data of F. anhuiense GSE09 may facilitate the elucidation of many biological traits related to the biocontrol against plant pathogens.
DOI: 10.1016/j.dib.2019.104270
PubMed: 31388522
PubMed Central: PMC6676235
Affiliations:
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Séoul</region></placeName></affiliation></author><author><name sortKey="Sajidah, Siti" sort="Sajidah, Siti" uniqKey="Sajidah S" first="Siti" last="Sajidah">Siti Sajidah</name><affiliation wicri:level="3"><nlm:affiliation>Laboratory of Plant Disease and Biocontrol, Department of Biosystems and Biotechnology, Korea University, Seoul, South Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Laboratory of Plant Disease and Biocontrol, Department of Biosystems and Biotechnology, Korea University, Seoul</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName></affiliation></author><author><name sortKey="Oh, Ji Yeon" sort="Oh, Ji Yeon" uniqKey="Oh J" first="Ji Yeon" last="Oh">Ji Yeon Oh</name><affiliation wicri:level="3"><nlm:affiliation>Laboratory of Plant Disease and Biocontrol, Department of Biosystems and Biotechnology, Korea University, Seoul, South Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Laboratory of Plant Disease and Biocontrol, Department of Biosystems and Biotechnology, Korea University, Seoul</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName></affiliation></author><author><name sortKey="Sang, Mee Kyung" sort="Sang, Mee Kyung" uniqKey="Sang M" first="Mee Kyung" last="Sang">Mee Kyung Sang</name><affiliation wicri:level="3"><nlm:affiliation>Laboratory of Plant Disease and Biocontrol, Department of Biosystems and Biotechnology, Korea University, Seoul, South Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Laboratory of Plant Disease and Biocontrol, Department of Biosystems and Biotechnology, Korea University, Seoul</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de 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type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><i>Flavobacterium anhuiense</i> (previously identified as <i>Flavobacterium johnsoniae</i>) strain GSE09 is a volatile-producing bacterium that exhibits significant biocontrol activity against an oomycete pathogen, <i>Phytophthora capsici</i>, on pepper plants. Here, we report the complete genome sequence data of strain GSE09, isolated from surface-sterilized cucumber root. The genome consists of a circular 5,109,718-bp chromosome with a G + C content of 34.30%. A total of 4,138 complete coding sequences including 15 rRNA, 66 tRNA, 3 ncRNA, and 51 pseudogene sequences were retrieved. Thus, the genome sequence data of <i>F. anhuiense</i> GSE09 may facilitate the elucidation of many biological traits related to the biocontrol against plant pathogens.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">31388522</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">2352-3409</ISSN><JournalIssue CitedMedium="Internet"><Volume>25</Volume><PubDate><Year>2019</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Data in brief</Title><ISOAbbreviation>Data Brief</ISOAbbreviation></Journal><ArticleTitle>Complete genome sequence data of <i>Flavobacterium anhuiense</i> strain GSE09, a volatile-producing biocontrol bacterium isolated from cucumber (<i>Cucumis sativus</i>) root.</ArticleTitle><Pagination><MedlinePgn>104270</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.dib.2019.104270</ELocationID><Abstract><AbstractText><i>Flavobacterium anhuiense</i> (previously identified as <i>Flavobacterium johnsoniae</i>) strain GSE09 is a volatile-producing bacterium that exhibits significant biocontrol activity against an oomycete pathogen, <i>Phytophthora capsici</i>, on pepper plants. Here, we report the complete genome sequence data of strain GSE09, isolated from surface-sterilized cucumber root. The genome consists of a circular 5,109,718-bp chromosome with a G + C content of 34.30%. A total of 4,138 complete coding sequences including 15 rRNA, 66 tRNA, 3 ncRNA, and 51 pseudogene sequences were retrieved. Thus, the genome sequence data of <i>F. anhuiense</i> GSE09 may facilitate the elucidation of many biological traits related to the biocontrol against plant pathogens.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jeong</LastName><ForeName>Jin-Ju</ForeName><Initials>JJ</Initials><AffiliationInfo><Affiliation>Laboratory of Plant Disease and Biocontrol, Department of Biosystems and Biotechnology, Korea University, Seoul, South Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sajidah</LastName><ForeName>Siti</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Laboratory of Plant Disease and Biocontrol, Department of Biosystems and Biotechnology, Korea University, Seoul, South Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Oh</LastName><ForeName>Ji Yeon</ForeName><Initials>JY</Initials><AffiliationInfo><Affiliation>Laboratory of Plant Disease and Biocontrol, Department of Biosystems and Biotechnology, Korea University, Seoul, South Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sang</LastName><ForeName>Mee Kyung</ForeName><Initials>MK</Initials><AffiliationInfo><Affiliation>Laboratory of Plant Disease and Biocontrol, Department of Biosystems and Biotechnology, Korea University, Seoul, South Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Division of Agricultural Microbiology, National Academy of Agricultural Science, Rural Development Administration, Wanju, South Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Kyoung-Su</ForeName><Initials>KS</Initials><AffiliationInfo><Affiliation>Division of Bioresource Sciences, Bioherb Research Institute, Kangwon National University, Chuncheon, South Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Ki Deok</ForeName><Initials>KD</Initials><AffiliationInfo><Affiliation>Laboratory 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IdType="pubmed">7288891</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Corée du Sud</li></country><region><li>Région capitale de Séoul</li></region><settlement><li>Séoul</li></settlement></list><tree><country name="Corée du Sud"><region name="Région capitale de Séoul"><name sortKey="Jeong, Jin Ju" sort="Jeong, Jin Ju" uniqKey="Jeong J" first="Jin-Ju" last="Jeong">Jin-Ju Jeong</name></region><name sortKey="Kim, Ki Deok" sort="Kim, Ki Deok" uniqKey="Kim K" first="Ki Deok" last="Kim">Ki Deok Kim</name><name sortKey="Kim, Kyoung Su" sort="Kim, Kyoung Su" uniqKey="Kim K" first="Kyoung-Su" last="Kim">Kyoung-Su Kim</name><name sortKey="Oh, Ji Yeon" sort="Oh, Ji Yeon" uniqKey="Oh J" first="Ji Yeon" last="Oh">Ji Yeon Oh</name><name sortKey="Sajidah, Siti" sort="Sajidah, Siti" uniqKey="Sajidah S" first="Siti" last="Sajidah">Siti Sajidah</name><name sortKey="Sang, Mee Kyung" sort="Sang, Mee Kyung" uniqKey="Sang M" first="Mee Kyung" last="Sang">Mee Kyung Sang</name><name sortKey="Sang, Mee Kyung" sort="Sang, Mee Kyung" uniqKey="Sang M" first="Mee Kyung" last="Sang">Mee Kyung Sang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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